Package: OdysseusCharacterizationModule 0.0.1
OdysseusCharacterizationModule: Handy and Minimalistic Common Data Model Characterization
Extracts covariates from Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) domains using an R-only pipeline. Supports configurable temporal windows, domain-specific covariates for drug exposure, drug era (including Anatomical Therapeutic Chemical (ATC) groupings), condition occurrence, condition era, concept sets and cohorts. Methods are based on the Observational Health Data Sciences and Informatics (OHDSI) framework described in Hripcsak et al. (2015) <doi:10.1038/sdata.2015.35> and "The Book of OHDSI" OHDSI (2019, ISBN:978-1-7923-0589-8).
Authors:
OdysseusCharacterizationModule_0.0.1.tar.gz
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OdysseusCharacterizationModule_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OdysseusCharacterizationModule/json (API)
| # Install 'OdysseusCharacterizationModule' in R: |
| install.packages('OdysseusCharacterizationModule', repos = c('https://a1exanderalexeyuk.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:75e39ce275. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 181 | ||
| source / vignettes | OK | 184 | ||
| linux-release-x86_64 | OK | 171 | ||
| macos-release-arm64 | OK | 101 | ||
| macos-oldrel-arm64 | OK | 85 | ||
| windows-devel | OK | 105 | ||
| windows-release | OK | 117 | ||
| windows-oldrel | OK | 107 | ||
| wasm-release | OK | 131 |
Exports:buildConceptSetQueriesbuildConceptSetQuerycreateConceptSetTempTablecreateOcmCovariateSettingsdefineAnalysisWindowsexecuteSpecexecuteSpecsgetDbOcmCovariateDataplanAnalysisrenderAllSpecSqlrenderSpecSqlsingleNodeSetting
Dependencies:backportsbitbit64blobcheckmateclicliprcpp11crayonDatabaseConnectorDBIdbplyrdigestdplyrgenericsgluehmsjsonlitelifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6RcppreadrrJavarlangSqlRenderstringistringrtibbletidyrtidyselecttriebeardtzdburltoolsutf8vctrsvroomwithr
Custom CovariateData Builder — Eunomia Demo
Rendered fromcovariate-data-builder.Rmdusingknitr::rmarkdownon May 23 2026.Last update: 2026-04-22
Started: 2026-04-22
OdysseusCharacterizationModule — Eunomia Walkthrough
Rendered fromeunomia-walkthrough.Rmdusingknitr::rmarkdownon May 23 2026.Last update: 2026-04-22
Started: 2026-04-22
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build SQL for Multiple Concept-Set Expressions | buildConceptSetQueries |
| Build SQL to Resolve a CIRCE Concept-Set Expression | buildConceptSetQuery |
| Materialise Concept-Set Queries into a Temporary Table | createConceptSetTempTable |
| Create Custom Covariate Settings for FeatureExtraction | createOcmCovariateSettings |
| Define analysis windows | defineAnalysisWindows |
| Execute a Single Analysis Specification | executeSpec |
| Execute Multiple Analysis Specifications | executeSpecs |
| Get Custom Covariate Data from the Database | getDbOcmCovariateData |
| Plan Characterization Analyses | planAnalysis |
| Print Characterization Settings | print.characterizationSettings |
| Print Single Node Setting List | print.singleNodeSettingList |
| Print Single Node Spec | print.singleNodeSpec |
| Render SQL for All Specs in a singleNodeSettingList | renderAllSpecSql |
| Render a Single-Node SQL Specification | renderSpecSql |
| Create a Single Node Analysis Specification | singleNodeSetting |
