{
  "_id": "6a100aa5acfb0bcc41c7f6b2",
  "Package": "OdysseusPathwayModule",
  "Title": "Cohort Pathway Analysis with Pre-Index Event Support",
  "Version": "0.0.1",
  "Authors@R": "person(\"Alexander\", \"Alexeyuk\",\nemail = \"AlexanderAlexeyuk@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Maintainer": "Alexander Alexeyuk <AlexanderAlexeyuk@gmail.com>",
  "Description": "Provides cohort pathway analysis for Observational Medical\nOutcomes Partnership (OMOP) Common Data Model databases,\nincluding both standard (post-index) and pre-index pathway\nanalyses. The pre-index analysis identifies sequences of events\noccurring in a lookback window before the target cohort index\ndate. Built on the 'CohortPathways' analysis framework\noriginally developed by Christopher Knoll and the Observational\nHealth Data Sciences and Informatics community through\n'WebAPI'. Methodological background and the originating\nimplementation are described in\n<https://github.com/OHDSI/CohortPathways>.",
  "License": "Apache License (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-22 07:46:50 UTC",
    "User": "root"
  },
  "Author": "Alexander Alexeyuk [aut, cre]",
  "Config/pak/sysreqs": "make default-jdk libicu-dev libx11-dev",
  "Repository": "https://a1exanderalexeyuk.r-universe.dev",
  "Date/Publication": "2026-04-21 21:09:08 UTC",
  "RemoteUrl": "https://github.com/cran/OdysseusPathwayModule",
  "RemoteRef": "HEAD",
  "RemoteSha": "6d689cac962bf9ea474b8147f762d187b3740b80",
  "MD5sum": "359425383be63ade5a64e8fd9ea14b6b",
  "_user": "a1exanderalexeyuk",
  "_type": "src",
  "_file": "OdysseusPathwayModule_0.0.1.tar.gz",
  "_fileid": "94b07beac4ae6672b9e03b744bb6d0f373a43b335adac487a01c8fd2490b16e3",
  "_filesize": 141595,
  "_sha256": "94b07beac4ae6672b9e03b744bb6d0f373a43b335adac487a01c8fd2490b16e3",
  "_created": "2026-05-22T07:46:50.000Z",
  "_published": "2026-05-22T07:49:57.825Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77338133641,
      "time": 149,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7155469628"
    },
    {
      "job": 77338133650,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155467201"
    },
    {
      "job": 77338133640,
      "time": 79,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7155449617"
    },
    {
      "job": 77338133628,
      "time": 155,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155471369"
    },
    {
      "job": 77337585087,
      "time": 237,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155426410"
    },
    {
      "job": 77338133631,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155459521"
    },
    {
      "job": 77338133634,
      "time": 72,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7155447658"
    },
    {
      "job": 77338133699,
      "time": 78,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7155449193"
    },
    {
      "job": 77338133705,
      "time": 75,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155448348"
    }
  ],
  "_buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/OdysseusPathwayModule",
  "_commit": {
    "id": "6d689cac962bf9ea474b8147f762d187b3740b80",
    "author": "Alexander Alexeyuk <AlexanderAlexeyuk@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.1\n",
    "time": 1776805748
  },
  "_maintainer": {
    "name": "Alexander Alexeyuk",
    "email": "alexanderalexeyuk@gmail.com",
    "login": "a1exanderalexeyuk",
    "description": "",
    "uuid": 87428750
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "DatabaseConnector",
      "role": "Imports"
    },
    {
      "package": "SqlRender",
      "role": "Imports"
    },
    {
      "package": "Eunomia",
      "role": "Suggests"
    },
    {
      "package": "igraph",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-17",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.0.1",
      "date": "2026-04-21"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "a1exanderalexeyuk",
      "count": 1,
      "uuid": 87428750
    }
  ],
  "_userbio": {
    "uuid": 87428750,
    "type": "user",
    "name": "alexander aleksiayuk"
  },
  "_downloads": {
    "count": 504,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OdysseusPathwayModule"
  },
  "_searchresults": 0,
  "_topics": [
    "openjdk"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/OdysseusPathwayModule.html",
    "manual.pdf"
  ],
  "_realowner": "a1exanderalexeyuk",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2026-04-21"
    }
  ],
  "_exports": [
    "buildEventSequenceGraph",
    "executeCohortPathways"
  ],
  "_help": [
    {
      "page": "buildEventSequenceGraph",
      "title": "Build an event sequence graph from pathway analysis results.",
      "topics": [
        "buildEventSequenceGraph"
      ]
    },
    {
      "page": "executeCohortPathways",
      "title": "Execute cohort pathway analysis.",
      "topics": [
        "executeCohortPathways"
      ]
    },
    {
      "page": "plot.event_sequence_graph",
      "title": "Plot an event sequence graph.",
      "topics": [
        "plot.event_sequence_graph"
      ]
    }
  ],
  "_rundeps": [
    "backports",
    "bit",
    "bit64",
    "blob",
    "checkmate",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "DatabaseConnector",
    "DBI",
    "dbplyr",
    "digest",
    "dplyr",
    "generics",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "Rcpp",
    "readr",
    "rJava",
    "rlang",
    "SqlRender",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "triebeard",
    "tzdb",
    "urltools",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libjvm",
      "package": "openjdk-21-jre-headless",
      "headers": "openjdk-21-jre-headless",
      "source": "openjdk",
      "version": "21.0.10+7-1~24.04",
      "name": "openjdk",
      "homepage": "https://openjdk.java.net/",
      "description": "OpenJDK Java runtime, using Hotspot JIT (headless)"
    }
  ],
  "_vignettes": [
    {
      "source": "using-odysseus-pathway-module.Rmd",
      "filename": "using-odysseus-pathway-module.html",
      "title": "Using OdysseusPathwayModule",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Setup",
        "Create Example Cohorts with Eunomia",
        "Run Post-Index Pathway Analysis",
        "Run Pre-Index Pathway Analysis",
        "Understanding the Returned Objects",
        "Using Separate Target and Event Cohort Tables",
        "Building an Event Sequence Graph",
        "Quick visualization",
        "Transition probabilities",
        "Downstream igraph analysis"
      ],
      "created": "2026-04-21 21:09:08",
      "modified": "2026-04-21 21:09:08",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "odysseuspathwaymodule",
  "_universes": [
    "a1exanderalexeyuk"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-05-22T07:49:22.000Z",
      "distro": "noble",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "2effb2ce519b268915bc43210151b4442358dce00bb060e99c85fdb2b198e03e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-05-22T07:49:16.000Z",
      "distro": "noble",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "e2b2f47ebdd2c7935c02a17e26129cfa46710cd659f47fc240b4d0fa5cd307a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-05-22T07:48:18.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "fbb870ba89dc6251ca9299e6fcd110c38dcbee3c8ddf2831f4d2cb8636d7c97b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-05-22T07:49:20.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "bb2a92cf239587ac602751953487d60e678dc49354cd6d392b8e58a9d09ad89d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1",
      "date": "2026-05-22T07:49:03.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "645a7a8e667ae9307e20b8267437468899eeac5a55f40652d97119d96c145b1d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-05-22T07:48:02.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "dc697d7500dd900e6379ba1dceaefa0f855d4067a26d530339890914c8faa23b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-05-22T07:48:06.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "3bfa1f86002f9ad1dfb65927c8d383062ab700d96eb1bbdb92cba95e4dbadd1d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-05-22T07:48:03.000Z",
      "commit": "6d689cac962bf9ea474b8147f762d187b3740b80",
      "fileid": "6b6401cdc2d4001e1f8c3bea5029d0f81375d30119419dc008781fc802d19c18",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/a1exanderalexeyuk/actions/runs/26275163477"
    }
  ]
}