Package: tidyOhdsiSolutions 0.1.0

tidyOhdsiSolutions: Tidy Utilities for Observational Medical Outcomes Partnership Common Data Model Workflows

Lightweight utilities for working with OMOP (Observational Medical Outcomes Partnership) Common Data Model (CDM) data in the Observational Health Data Sciences and Informatics ecosystem. Provides base-R re-implementations of common 'purrr' functional helpers, tools to convert plain data frames into 'CIRCE' concept set expressions, SQL generators for resolving concept sets against an OMOP vocabulary schema without requiring 'CirceR'.

Authors:Alexander Alexeyuk [aut, cre]

tidyOhdsiSolutions_0.1.0.tar.gz
tidyOhdsiSolutions_0.1.0.zip(r-4.7)tidyOhdsiSolutions_0.1.0.zip(r-4.6)tidyOhdsiSolutions_0.1.0.zip(r-4.5)
tidyOhdsiSolutions_0.1.0.tgz(r-4.6-any)tidyOhdsiSolutions_0.1.0.tgz(r-4.5-any)
tidyOhdsiSolutions_0.1.0.tar.gz(r-4.7-any)tidyOhdsiSolutions_0.1.0.tar.gz(r-4.6-any)
tidyOhdsiSolutions_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tidyOhdsiSolutions/json (API)

# Install 'tidyOhdsiSolutions' in R:
install.packages('tidyOhdsiSolutions', repos = c('https://a1exanderalexeyuk.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.00 score 437 downloads 58 exports 1 dependencies

Last updated from:475378df05. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK135
source / vignettesOK213
linux-release-x86_64OK135
macos-release-arm64OK99
macos-oldrel-arm64OK105
windows-develOK82
windows-releaseOK78
windows-oldrelOK99
wasm-releaseOK109

Exports:as_mapperbuildConceptSetQueriesbuildConceptSetQuerycohortFromConceptSetcohortToJsoncollectCsFromCohortcreateConceptSetCohortimapimap_chrimap_dblimap_dfrmapmap_chrmap_dblmap_dfcmap_dfrmap_intmap_lglmap2map2_chrmap2_dblmap2_dfcmap2_dfrmap2_intmap2_lglmsg_abortmsg_blankmsg_bulletmsg_dangermsg_debugmsg_headermsg_infomsg_kvmsg_listmsg_processmsg_progressmsg_rulemsg_spinnermsg_successmsg_timedmsg_todomsg_trymsg_verbosemsg_warnmsg_warningpluckpmappmap_chrpmap_dblpmap_dfcpmap_dfrpmap_intpmap_lglpwalktoConceptSettoConceptSetswalkwalk2

Dependencies:jsonlite

Building Cohorts from Concept Sets

Rendered fromcohort-from-concept-set.Rmdusingknitr::rmarkdownon Jun 14 2026.

Last update: 2026-04-15
Started: 2026-04-15

Console Messaging with handyCli

Rendered fromhandy-cli.Rmdusingknitr::rmarkdownon Jun 14 2026.

Last update: 2026-04-15
Started: 2026-04-15

Readme and manuals

Help Manual

Help pageTopics
Convert Input to a Mapping Functionas_mapper
Resolve Multiple Concept Sets to SQLbuildConceptSetQueries
Build SQL to resolve a concept set expression without Java/CirceRbuildConceptSetQuery
Create a CirceR-compatible cohort definition from multiple concept set expressionscohortFromConceptSet
Serialize a Cohort Expression to JSONcohortToJson
Extract Concept Set Expressions from a Cohort DefinitioncollectCsFromCohort
Create a CirceR-compatible cohort definition from a concept set expressioncreateConceptSetCohort
Apply a Function to Each Element with Its Index or Nameimap imap_chr imap_dbl imap_dfr
Apply a Function to Each Element of a List or Vectormap map_chr map_dbl map_dfc map_dfr map_int map_lgl
Apply a Function to Pairs of Elements from Two Listsmap2 map2_chr map2_dbl map2_dfc map2_dfr map2_int map2_lgl
Stop with a styled error messagemsg_abort
Print a blank linemsg_blank
Print a bullet pointmsg_bullet
Print a danger / error message (styled, non-stopping)msg_danger
Print a debug message (only when option is set)msg_debug
Print a section headermsg_header
Print an informational messagemsg_info
Print a two-column key-value tablemsg_kv
Print a named list of itemsmsg_list
Print a process / action messagemsg_process
Simple inline progress countermsg_progress
Print a simple rule / dividermsg_rule
Animated spinner for long-running tasksmsg_spinner
Print a success messagemsg_success
Time a block and report durationmsg_timed
Print a todo itemmsg_todo
Run expr and catch + style any errors/warningsmsg_try
Message only when verbose option is TRUEmsg_verbose
Print a warning message (styled, non-stopping)msg_warn
Warn with a styled warning messagemsg_warning
Extract an Element from a Nested Structurepluck
Apply a Function to Multiple Lists in Parallelpmap pmap_chr pmap_dbl pmap_dfc pmap_dfr pmap_int pmap_lgl
Convert a single data.frame to a concept set expression listtoConceptSet
Convert Concept Set Expression Tibble(s) to Concept Set Expression ListstoConceptSets
Apply a Function for Side Effectspwalk walk walk2